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please take a look at BrainSuite statistical toolbox.
http://brainsuite.org/bss/You can do TBM, CBM, ROi based analysis etc with it.
Based on ϵͳ�Ҳ���ָ����·���� in the error message, the error is probably due to language settings.
Can you try renaming the file to some name that only uses plain characters?
thanks,You need to have MCR 2015b installed on the computer. A different version of MCR or a full Matlab installation won’t work. Please make sure to have the exact version of MCR for BrainSuite to work correctly.
However, having additional installations of Matlab or different version of MCR won’t affect BrainSuite performance.You probably are not running the whole sequence as directed here.
You need to run the full CSE sequence before running the SVReg sequence.
http://brainsuite.org/tutorials/cseexcercise/The numbers reported in roiwise.stats.txt use partial tissue fractions in each voxels instead of either counting voxels of gray matter or white matter. Therefore I recommend using that number.
The numbers computed using the label tool computes the number of voxels for a given label. In studies, it might be better to use the former since that approach uses partial tissue fraction in each voxel.
Hi Rob,
Thanks for reporting the issue. Can you please let me know which executable were you using? Was it BDP.sh?
You can try the following workaround for now. You can simply load and save the T1 from brainsuite. It should save the header in brainsuite friendly format. Then proceed with the analysis using this saved T1.
AnandNot sure why that would happen. Please make sure that you are saving the xml file in the directory where you have write access. Perhaps you tried to save it in a read only directory, like BrainSuite installation directory?
You are not creating new labels, just the new color scheme, right?
You can load the original volume, then open label. this will show labels in the original color scheme.
to load your new colorscheme, open label toolbox, load description and load the xml file that you saved. this should show the changed colors.I am not sure what do you mean by saving the atlas setup. Can you please describe what you want to do? If you mean that you want to load a set of files each time you open brainsuite, you can try dragging and dropping all the files at once to see if they load.
You can choose the colors of individual ROIs by using the label tool.
http://brainsuite.org/delineation/roi/label-painter-tool/You can modify the colors, recolor and save the surfaces.
If you want back the original color, you can click on load description, select the label description xml file in the atlas directory and then goto surface view and select color by labels.Ok thanks. From the BrainSuite GUI, goto Cortex->Select SVReg directory.
Then from the dialog box, goto BrainSuite installation folder and select directory named svreg.
After this, try running the whole sequence for your subject data and it should work.The next error is something else. It is due to some errors in surface extraction. Please make sure that the cortical surface you get look reasonable, as shown on brainsuite website.
Hi Wy, I will try to help you with this.
Can you try running /Applications/BrainSuite18a/svreg/bin/svreg_label_surf_hemi.sh
from the command line and let me know what message you get?Hi Shai,
You could simply use
cortical_extraction.sh
and svreg.sh to do the processing. svreg.sh includes the refinement steps.Please try installing
Visual C++ Redistributable Packages for Visual Studio 2013available from
https://www.microsoft.com/en-us/download/details.aspx?id=40784Make sure to get
vcredist_x64.exe
After this the programs should work.
