[roeysc]

Dear all,
We would like to run the SVReg pipeline on multiple subjects using the command line (on an Ubuntu 16.4 system).
We thought the best practice would be using the cortical_extraction.sh script. However, we’re not sure how to apply the “Refine sulcal curves” option which is available in the GUI.

Could you please tell us which of the following commands you suggest we use, and at what stage:
1) refine_sulcal_hemi.sh
2) refine_ROIs2.sh
3) svreg_refinements.sh

Or perhaps there is some flag we missed?

Many thanks!
Best,
Shai and Roey

[Anand Joshi]

Hi Shai,
You could simply use
cortical_extraction.sh
and svreg.sh to do the processing. svreg.sh includes the refinement steps.

[roeysc]

Thank you Anand! We will try your suggestion.

[Author]

Posts