Forum Replies Created
Great! it probably is due to some header issue in the original image. Glad that it is working now.
To me, the header info looks good and should not be a problem. Is there a long neck in the acquisition? The only time when I see an issue with the skull stripping is when there is a long neck or if there is some imaging artifact. You can use the mask tool in BrainSuite to clean up the images or remove the neck. If that doesn’t work if you can share the image or screenshot I can have a look.
The installation needs the exact version of MCR (2019b) in this case.
It is possible that there is a header issue in your images. Please check if the header in your images is correct. Based on the error message you mention it seems that the values are all 0 or negative.
To check the header.
Please 1) open the image in BrainSuite,
2) Goto Tools->Volume Info
If you still have the problem, if you can post that information here I can have a look.
It might be possible that the image header is wrong. Can you check if the image values are positive?
It might be possible that the image header is wrong. Can you check if the image values are positive?December 28, 2019 at 7:19 pm in reply to: how to present the statistical results on the brain template #2053
There are slides in the link on diffusion analysis (FA). sMRI analysis (T1) can be done using tensor based morphometry (TBM). Please check slides on those.December 28, 2019 at 6:29 pm in reply to: how to present the statistical results on the brain template #2051
Are you running ROI wise analysis? You can check slides 43-45.December 28, 2019 at 5:17 pm in reply to: how to present the statistical results on the brain template #2049
The visualization is described here:
Please let me know how it goes.
Have you tried the BrainSuite tutorials yet? If not I highly recommend them to become familiar with BrainSuite.
Specifically try these
Please make sure that your data looks like the figures shown in the tutorials.
I am not sure if we have written description of each label, but I will check with our team.
Can you please describe the exact problem, do you think it is inaccurate or have trouble finding that label in the atlas?
Can you check if the surfaces are extracted correctly?
Please check pial and inner cortical surfaces.
Yes Please check
BDP Addons: Tools for processing data generated using BrainSuite and BDP. It also includes a general purpose affine registration tool.