Forum Replies Created
May 28, 2023 at 10:28 pm in reply to: Automation of multiple Fibertrack saves #4796
I am still waiting for a response.
AdrienApril 25, 2023 at 7:38 pm in reply to: Automation of multiple Fibertrack saves #4750
thanks for the quick reply!
I am trying to single out selected fiber tracks and save them for further FA and MD calculations with TractConnect, but on a larger scale.
At the moment I am manually selecting the desired fibertracks using the computed tracks from the connectivity matrix, and then saving the filtered fiber tracks (e.g. L. Insula to L. Amygdala) as a BrainSuite Track File (*dft).
What I am looking for now is a way to not click through this process manually for each of my predefined fiber tracks.April 14, 2022 at 4:54 am in reply to: BDP error (badsubscript) #3528
having a similar problem, any solutions yet?
Error in find_bounding_box (line 16)
Error in EPI_correct_files_registration_INVERSION>trim_msk_PED (line 513)
Error in EPI_correct_files_registration_INVERSION (line 271)
Error in coregister_diffusion_mprage_pipeline (line 219)
Error in BrainSuite_Diffusion_pipeline (line 26)
MATLAB:badsubscriptJanuary 27, 2022 at 9:05 am in reply to: Access Denied after CMC command for BDP #3253
It worked after I reinstalled brainsuite21a on the same drive ass the file location.
Thanks for all your help! :)
AdrienJanuary 27, 2022 at 3:07 am in reply to: Access Denied after CMC command for BDP #3252
I’ve tried to run the tutorial with the material but to no aveil. I still get the error message access denied and that the app cannot be executed. I’ve also tried repairing in admin mode with sfc/ scannow.
Prompt for reference:
Microsoft Windows [Version 10.0.19042.1466]
(c) Microsoft Corporation. Alle Rechte vorbehalten.
C:\Users\nicad>”D:\Utility\BrainSuite21a\bdp\bdp.exe” C:\Users\nicad\Downloads\BrainSuiteTutorialDWI\2523412.bfc.nii.gz –tensor –FRT –nii C:\Users\nicad\Downloads\BrainSuiteTutorialDWI\2523412.dwi.nii.gz -g C:\Users\nicad\Downloads\BrainSuiteTutorialDWI\2523412.dwi.bvec -b C:\Users\nicad\Downloads\BrainSuiteTutorialDWI\2523412.dwi.bval
(tensor, FRT and nii all with doubledashes of course)January 26, 2022 at 4:52 am in reply to: Access Denied after CMC command for BDP #3245
After installing the 2019b runtime i get the same error.January 26, 2022 at 12:56 am in reply to: Access Denied after CMC command for BDP #3243
Thank you for the quick reply!
I was running Matlab 2021b and will try it now with 2019b.
I’m processing my data as follows:
dicom to nifti using micro GL
open brainsuite and drag in DTI.nii.gz, then process
open CMC and use the following command:”D:\Utility\BrainSuite21a\bdp\bdp.exe” ”C:\Users\nicad\Desktop\PHD\DTI\Ersatzdaten\DCM2\T1.bfc.nii.gz” –tensor –FRT –FRACT –nii “C:\Users\nicad\Desktop\PHD\DTI\Ersatzdaten\DCM2\DWI.nii” -g “C:\Users\nicad\Desktop\PHD\DTI\Ersatzdaten\DCM2\DWI.bvec“ -b “C:\Users\nicad\Desktop\PHD\DTI\Ersatzdaten\DCM2\DWI.bval“ –generate-stats
January 26, 2022 at 12:56 am in reply to: Access Denied after CMC command for BDP #3242
- This reply was modified 1 year, 4 months ago by Whiiz.