[Whiiz]

Dear Hivemind,

I am using Brainsuite to analyze the fibertracks of 107 subjects.
Is there a way to automate the saving of multiple fibertracks for each subject?

Example:
I have 36 ROI´s (e.g. Putamen to Thalamus, etc.) that I wanna save with Brainsuite.
Is there a way to “give” Brainsuite a list to save all selected ROI´s?

At the moment it is very time intensive to click through the whole process to save so many ROI´s for so many subjects, if there is any way to make it faster, I´d really appreciate your input!

[David Shattuck]

Hello –

I have written some command-line tools that can probably do this. I thought we were distributing them, but I just checked and they aren’t in the public release yet.

Can you be more specific about what you are trying to do and what steps you are taking? Are you trying to give it pairs of ROIs and save out a .dft file?

thanks,
David

[Whiiz]

Hi David,
thanks for the quick reply!

I am trying to single out selected fiber tracks and save them for further FA and MD calculations with TractConnect, but on a larger scale.
At the moment I am manually selecting the desired fibertracks using the computed tracks from the connectivity matrix, and then saving the filtered fiber tracks (e.g. L. Insula to L. Amygdala) as a BrainSuite Track File (*dft).
What I am looking for now is a way to not click through this process manually for each of my predefined fiber tracks.

[David Shattuck]

If you send an email to support at brainsuite.org, I’ll see what I can do. Let me know what platform (Mac/Win/Linux) you are using.

thanks,
David

[Whiiz]

Hey,

I am still waiting for a response.

Kind regards,

Adrien

[Author]

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