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Anand Joshi
ParticipantDuring the cerebrum labelling step, try changing cost function using the dropdown menu.
Also try centering option.Anand Joshi
ParticipantThe SVReg does nonlinear warping.
If you want to map data from subject to atlas, you can use
svreg_apply_map.sh as documented herePlease let me know more details of what you want to do so that I can help with this.
Anand Joshi
Participant.cortex.dewisp.mask.nii.gz will generate .inner.cortex.dfs
Anand Joshi
ParticipantFor BraiNSuite 21a, you need Matlab MCR for 2019b
https://www.mathworks.com/products/compiler/matlab-runtime.htmlAre you installing MCR in non-standard location? If yes, please set BrainSuiteMCR environment variable to point to the path. You can do that in Linux by
export BrainSuiteMCR=/path/to/your.mcrAnand Joshi
ParticipantPlease make sure that the atlas is unzipped into a folder and copied to the svreg subfolder within BrainSuite installation. It needs to be along with other atlases within svreg subfolder.
Anand Joshi
Participantwhat do you mean when you say download crashes? Have you tried wget or curl commands? They are able to resume paused or interrupted downloads.
Anand Joshi
ParticipantYou can do it from the gui but not command line that I am aware of.
Anand Joshi
ParticipantCan you please make sure that you have installed Matlab MCR?
Please make sure that you have followed the installation instructions here:
http://brainsuite.org/quickstart/installation/ -
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