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I wonder if you have the Surface RT which might not be compatible.
The system requirements for Windows are as follows: Windows 64-bit (7, 8, 10, Vista)
Memory: 2 GB (4+GB recommended)
Processor: X86If your Toshiba has those specs then it should work fine.
Can you locate where BrainSuite is installed?
See if you can locate BrainSuite in your /Applications directory.
If so this should work:1. Open BrainSuite
2. Go to Cortex (located on the top menu bar) -> Select SVReg Directory
3. Navigate to svreg directory (try going to /Applications/BrainSuite16a1/svreg)
4. Select Openthe forum is not posting the dashes correctly. there should be 2 dashes before nii
you can find an examples here
http://brainsuite.org/processing/diffusion/pipeline/you had an extra space: “- nii” instead of “–nii”
also make sure the command is all in one line with no returns./Applications/BrainSuite16a1/bdp/bdp.sh /Users/leonidastra86/Desktop/Diffusion/ o20170124_183359lalalas008a1001.bfc.nii –nii /Users/leonidastra86/Desktop/Diffusion/lalala.nii -g /Users/leonidastra86/Desktop/Diffusion/lalala.bvec -b /Users/leonidastra86/Desktop/Diffusion/lalala.bval
When you use BrainSuiteAtlas1:
ROI#701 is the left ventricle.
ROI#720 is the right ventricle.When you use BCI-DNI_brain atlas:
ROI#720 is the right and ROI#721 is the leftsorry for the confusion.
We have tested our software on children as young as 4 years old. This works relatively well. Major preprocessing and registration issues arise when you’re working with images of neonates where T1 contrast of grey and white matter is flipped in comparison to adult T1 images.
If you’ve tested SVReg on your subjects and still believe that a child atlas is needed, you have the option of modifying the labels on one of your subjects and creating your own custom atlas using the module svreg_make_atlas. Directions can be found at the bottom of the page: http://brainsuite.org/processing/svreg/svreg_modules/
Sorry for the late response.
It depends on which components you want to you FSL for and which components you want to you BDP for.
Of the things you named, I would suggest only running the eddy current correction and then you can use that output from FSL as your input for BDP.
on line 14 of sample_eig2nifti.m:
addpath(‘src’); % replace by correct path of ‘src’ directory
did you replace this path?
Here are changelogs for SVReg and BDP. There were no changes between 15a and 15b for these two.
You can also find matlab tools in the additional tools page to read BrainSuite output files.
http://brainsuite.org/processing/additional-tools/ReadDFS.m is specific to dfs files.
http://brainsuite.org/matlab_scripts/readdfs.m
