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  • in reply to: Error in find_bounding_box #3581

    I have similar error as follows and I have tried correcting it but to no avail.

    Any help would be appreciated. Thanks

    Rigid registration done.
    Setting up data for non-rigid registration based distortion correction…
    Correcting intensity non-uniformity in b=0 image…Index exceeds the number of array elements (0).

    Error in find_bounding_box (line 41)

    Error in EPI_correct_files_registration_INVERSION>trim_msk_PED (line 538)

    Error in EPI_correct_files_registration_INVERSION (line 296)

    Error in coregister_diffusion_mprage_pipeline (line 244)

    Error in BrainSuite_Diffusion_pipeline (line 51)



    Hi everyone, I am somewhat new to using Brainsuite and I hope I would find a solution to my problems here. I have a group of MRI scans and I am interested in obtaining the tissue probability ratio (for Grey matter, white matter and CSF) of voxels in every anatomical region in each hemisphere labelled in AAL2. So I wonder if Brainsuite could be used in processing MRI such that I would be able to identify the Tissue probability ration in voxels in every Region.

    Also, how can I label the anatomical regions of the brain using Brainsuite?

Viewing 2 posts - 1 through 2 (of 2 total)