S1l3nz

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  • in reply to: Brain Mapping #1528
    S1l3nz
    Participant

    I´m trying to get the more detailed Volumes. In the GUI i can get them at
    DelineationToolbox->ROI Details->Compute Volumes and then I can save them as a *csv.
    But how to do this on the cmdline? (Linux)

    in reply to: Brain Mapping #1526
    S1l3nz
    Participant

    I`m a little bit confused on how to use the generate_vol_param_stats_xls.sh command.
    Where do I find the requested param_nii_file?
    If I try this:
    /opt/BrainSuite18a/svreg/bin/generate_vol_param_stats_xls.sh SUBJECT -v2
    It says that the *.label.nii.gz file is missing. But its there!
    I need Help!

    Full massage:

    root@voltool:/home/flo/DATA/Files/RAD-2010-261829# /opt/BrainSuite18a/svreg/bin/generate_vol_param_stats_xls.sh /home/flo/DATA/Files/RAD-2010-261829 -v2
    Error using generate_vol_param_stats_xls (line 57)
    SVREG label file missing: SVREG volume labels file not found. Please check if <name>.svreg.corr.label.nii.gz or <name>.svreg.label.nii.gz or <name>.svreg.corr.manual.label.nii.gz exists.
    
    root@voltool:/home/flo/DATA/Files/RAD-2010-261829# ls -l | grep *.svreg.label*
    -rwxrwxrwx 1 root   root      343194 Okt 20 15:23 RAD-2010-261829.svreg.label.nii.gz
Viewing 2 posts - 1 through 2 (of 2 total)