[JonatanSnir]

Dear Dr. Canales,
There may be alternative approaches but this is what I do:
Download dcm2nii: https://www.nitrc.org/projects/dcm2nii/

It has a GUI that you simply drop your files onto and request it to change files into .nii format. very simple to use. BrainSuite takes in .nii files.

Hope that helps.
Jonatan

[JonatanSnir]

With respect to item #9, can I import data files after preprocessing with FSL – this would include BET, Eddy current corrections, registration to standard space, TBSS, DTIFIT, BEDPOSTX etc.. I hear great things about the brainsuite and would very much like to use it. If there is a proper way to prepare the output data from FSL preprocessing pipeline to fit the use of BDP could you please direct me to the instructions?
Thanks kindly,
Jon

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