Real time fiber disply between two rois

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    • #752
      Saske
      Participant

      • #753
        divarada
        Participant

          Hi Saske,

          Here are the steps:
          1. Create the first ROI (plus symbol in Track filtering) – you should see a sphere in the surface view and circles in the volume view.
          2. Go to the volume view, press ctrl (command for mac) and move the circl to desired location.
          3. Add another ROI – you should see sphere of different color. Select it by clicking on the ROI description in the track filtering menu. This means you have selected the desired ROI.
          4. Go to volume view and move it around. You should see tracks that pass through both spheres.

          Here is a ppt from an earlier training event that explains how to create spherical ROIs in section 3.3.
          Link – http://brainsuite.org/wp-content/uploads/2015/10/Part3b_Bhushan_BDP_workshop_hands_on.pdf

        • #5384
          V2U-Services
          Participant

            Consider utilizing Python libraries like DIPY or tools like MATLAB to accomplish real-time fiber display between two ROIs. Utilize interactive visualization tools such as Mayavi or PyVista, define your ROIs, and extract pertinent tractography data. Use GPU acceleration or multithreading to maximize performance for more fluid real-time rendering.

          • #5407
            Anonymous

              To achieve real-time fiber display between two ROIs, use tractography software like DSI Studio or MRtrix. Define the ROIs, run the fiber tracking algorithm, and visualize the connectivity dynamically. Ensure optimal parameter settings for accuracy.

            • #5669
              vitquay
              Participant

                Hello, Iam very happy to welcome you: https://vitquay.net/

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