BrainSuite

errors in surfaces

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    • March 29, 2018 at 2:14 am #1184
      xlssu
      Participant

      when i run it,the follow words were appear
      Mapping to unit square
      THERE ARE ERRORS IN SURFACES! POSSIBLY ISOLATED/DISCONNECTED PATCHES!!TRYING TO CONTINUE.. CHECK OUTPUT!!

    • March 29, 2018 at 2:15 am #1185
      xlssu
      Participant

      error recording
      Welcome to BrainSuite18a (build #3115, built with Qt 5.6.3, compiled with MSVC2015 on Feb 28 2018)
      Copyright (C) 2018 The Regents of the University of California
      This program is free software and is released under a GNU General Public License; Version 2. For more details, please see the enclosed license files.
      BrainSuite uses the Qt GUI Toolkit. The Qt GUI Toolkit is Copyright (C) 2015 Digia Plc and/or its subsidiary(-ies) and is licensed under the LGPL v2.1.
      BrainSuite install directory: C:\Program Files\BrainSuite18a
      Error: SVReg executable directory C:\Program Files\BrainSuite18a\svreg\bin does not exist.
      Error: SVReg atlas directory C:\Program Files\BrainSuite18a\svreg\BrainSuiteAtlas1 does not exist.
      SVReg is not configured to run. If you wish to perform surface/volume registration, please install it.
      error loading D:\liulu\T1.nii
      unable to load D:\liulu\T1.nii
      error loading D:\liulu\T1.nii
      unable to load D:\liulu\T1.nii
      Autosave Prefix is D:\liulu\T1
      Using Autosave Prefix:D:\liulu\T1
      Finished file preparation 0.002
      Executing: C:\BrainSuiteSVreg\svreg\bin\svreg_label_surf_hemi.exe D:\liulu\T1 C:\BrainSuiteSVreg\svreg\BrainSuiteAtlas1\mri left -v1
      Executing: C:\BrainSuiteSVreg\svreg\bin\svreg_label_surf_hemi.exe D:\liulu\T1 C:\BrainSuiteSVreg\svreg\BrainSuiteAtlas1\mri right -v1
      Surface labeling process canceled by user.
      Register and Label Brain took 15:46.516
      sequence took 15:46.518
      Executing: C:\BrainSuiteSVreg\svreg\bin\svreg_label_surf_hemi.exe D:\liulu\T1 C:\BrainSuiteSVreg\svreg\BrainSuiteAtlas1\mri left -v1
      Executing: C:\BrainSuiteSVreg\svreg\bin\svreg_label_surf_hemi.exe D:\liulu\T1 C:\BrainSuiteSVreg\svreg\BrainSuiteAtlas1\mri right -v1
      Finished surface labeling 17:15
      error reading D:\liulu\T1.left.mid.cortex.svreg.init.dfs
      error reading D:\liulu\T1.right.mid.cortex.svreg.init.dfs

    • April 3, 2018 at 3:25 pm #1190
      Anand Joshi
      Moderator

      Please inspect the quality of cortical surfaces. It is likely that the surfaces are not extracted properly. Do they look realistic?

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