BrainSuite

BDP running error message

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    • July 7, 2017 at 3:01 pm #761
      sychoi
      Participant

        It looks like the bvec file is not in the format that can be read by BDP
        Here is a sample of what BDP looks for: http://brainsuite.org/examples/siemens_20.txt

        You might have to reformat it to this or I would suggest using dcm2nii to convert your dicoms to nifti

      • July 7, 2017 at 3:06 pm #763
        weimiao
        Participant

          Hi Sychoi,
          I downloaded this data from
          http://brainsuite.org/tutorials/dtiexercise/

          IT should be matched, right?
          Thanks.
          Miao

        • July 7, 2017 at 3:38 pm #764
          weimiao
          Participant

            oh, somehow it is running fine now. I will let you know when there are other issues I am not sure how to solve. Thanks.
            Miao
            PS. I run my own data and got bfc.nii.gz, but how to get .dwi.bval and .dwi.bvec and dwi.nii.gz file to fun BDP?

          • July 8, 2017 at 6:19 pm #781
            divarada
            Participant

              Bvalue (.bval) and Bvector (.bvec) files are sampling protocol information of your dwi file. This should be provided as input to run BDP – It should have been published along with your diffusion data.

            • July 9, 2017 at 11:28 am #786
              weimiao
              Participant

                It has not been published yet. Where do I get them?

              • August 28, 2017 at 8:03 pm #838
                divarada
                Participant

                  You should have got them along with your data.

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