SVReg error: required files not found

Forums Forums Surface and Volume Registration (SVReg) SVReg error: required files not found

Viewing 1 reply thread
  • Author
    Posts
    • #1390
      aojha
      Participant

      Hello!

      I’m trying to process a brain but received the following error message at the Surface/Volume Registration step:

      “The following required files are not present:
      /Volumes/iang-76/active/ELS/ELS-T2/196-T2/anatomics/spgr/T1w_9mm_sag_raw.nii.gz[bias corrected].left.inner.cortex.dfs
      .
      .
      .
      /Volumes/iang-76/active/ELS/ELS-T2/196-T2/anatomics/spgr/T1w_9mm_sag_raw.nii.gz[bias corrected].bfc.nii.gz
      Error: Required files were not found. Process halted.”

      The error log is correct that those files are not located there. Is there any way to find out where those files (which I assume were generated from a previous step) might be saving to? Every step before this seemed to work without a hitch. Any help would be much appreciated!!

      Thanks

    • #1391
      Anand Joshi
      Moderator

      You probably are not running the whole sequence as directed here.
      You need to run the full CSE sequence before running the SVReg sequence.
      http://brainsuite.org/tutorials/cseexcercise/

Viewing 1 reply thread
  • You must be logged in to reply to this topic.