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April 29, 2020 at 9:05 pm #2217lilinfdsaParticipant
Dear BrainSuite team,
I encountered an error in surface registration stage.
OS system: MacOS Catalina
MatlabR2019b was installed
“svreg_label_surf_hemi.sh” was edited, BrainSuiteMCR=”/Applications/Polyspace/Matlab”;
CSE has been run without error.
In terminal, run “svreg_label_surf_hemi.sh”,
svreg_label_surf_hemi : surface registration and labeling (svreg)
This is the main program for surface registration. First, the surface is
smoothed to create a multiresolution representation of the surface. An
initial registration is performed by aligning the 3D coordinates of this
smoothed surface. This is followed by p-harmonic mapping to a square and
For more information, please see http://brainsuite.org
Authored by Anand A. Joshi, Signal and Image Processing Institute
Department of Electrical Engineering, Viterbi School of Engineering, USC
usage: svreg_label_surf_hemi.sh [subject fileprefix] [atlas fileprefix]
subject fileprefix path and filename prefix of the subject’s output
from BrainSuite’s Cortical Surface Extraction
atlas fileprefix path and filename prefix of atlas files and labels
to which the subject will be registered
hemi the hemisphere to refine; either left or right
-v# Controls the verbosity of output messages (# is 0, 1, or 2)
-t display timestamps along with output messages
While for registration process, the error happened.
Thanks very much.
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