Co-registration

This topic contains 3 replies, has 2 voices, and was last updated by  sychoi 1 year, 4 months ago.

  • Author
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  • #1548

    shek
    Participant

    Dear all,
    I am writing to ask you that how I can do co-registration by Brainsuite GUI.
    Here you can see what I want to do :

    My files:

    1) I have ROI of tumor that this ROI was extracted by T1.

    2) So my reference image is T1

    3) I have DTI image

    Goal: I am going to register ROI of tumor on diffusion space.

    Lets me know How I can do it by Brainsuite GUI?
    Many thanks in advance!
    Fatima

  • #1549

    sychoi
    Participant

    This can be done using BDP using the following flags

    –custom-t1-label
    –output-diffusion-coordinate

    you can find documentation for these flags here:

    Let us know if this works for you.

  • #1552

    shek
    Participant

    Dear Sychoi,
    Thank you so much for writing to me.
    1. Whether there is a way to do co-registration just in Brainsuite GUI or not?
    2. Could you please kindly send me documentation for these flags? becasue you forgot to put the link of these flags in previous email.
    All the best
    Fatima

  • #1557

    sychoi
    Participant

    BDP (BrainSuite Diffusion Pipeline) is a commandline tool only.

    sorry about that.
    flags: http://brainsuite.org/processing/diffusion/flags/
    overview: http://brainsuite.org/processing/diffusion/
    usage: http://brainsuite.org/processing/diffusion/pipeline/

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