I’m struggling to get a batch (Windows) or script (linux) file up and running all the way to ROI analysis (for automated batch processing).
Does anyone have a working file they can send me as a template?
There is a cortical_extraction.sh script that runs through the surface generation and there is a script for labeling svreg.sh
These scripts are included in bin and svreg/bin directories respectively.
You can save the extraction settings from here:
file -> save extraction settings