Reply To: Resampling glitch when the NiFTI header is oblique

Forums Forums BrainSuite Diffusion Pipeline (BDP) Resampling glitch when the NiFTI header is oblique Reply To: Resampling glitch when the NiFTI header is oblique

#1331
robreid
Participant

Hi Anand,

Sorry for not replying earlier. I was using BDP.sh, for scriptability, and have never actually gotten the whole brainsuite package running. If I understand correctly though, and I think I do, I could easily manipulate the T1 to have a diagonal (non-oblique) affine matrix outside brainsuite, and carry on. I do not mind resampling the T1 for this purpose since its native resolution is much better than the dMRI’s.

Thanks!

Rob