[steso]

Hi

I started from scratch, regenerated the bfc file in BrainSuite and now it’s working! Probably, the file was still somehow corrupted even though I was able to open it in other tools.
I’ll keep you posted if I run into other problems.
Thanks again

Best

Stefan

[steso]

I can open the T1 in BrainSuite without any problems, also in mricron or unzip it with 7-zip, no problem. The error occurs when running the distortion correction in bdp:

bdp.exe t1.bfc.nii.gz –nii dwi.nii –bmat table.mat –dwi-mask mask.nii

Reading input flags…

Checking input files…
Error using gunzip>gunzipwrite (line 184)
File “t1.bfc.nii.gz” is not in GZIP format.

Error in gunzip>gunzipEntries (line 122)

Error in gunzip (line 64)

Error in load_untouch_nii_gz (line 53)

Error in check_nifti_file (line 40)

Error in bdp_setup (line 745)

Error in BrainSuite_Diffusion_pipeline (line 14)

MATLAB:gunzip:notGzipFormat

Best

Stefan

[Author]

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