[cliogz]

now I am realizing that when trying to write 2 dashes here only one appears one. You can follow what I tried to say if you look in here: http://brainsuite.org/tutorials/dtiexercise/

Notice how some flags have only one dash ‘-‘ (like -g and -b). But, others have 2 dashes ‘– -‘(like tensor, FRT, FRACT, nii, generate-stats)

[cliogz]

hi Adrien,
By looking at your command line I can detect some errors.
This would be an example that should runs fine:
bdp.exe 2523412.bfc.nii.gz –tensor –FRT –FRACT –nii 2523412.dwi.nii.gz -g 2523412.dwi.bvec -b 2523412.dwi.bval –generate-stats

Notice how some flags have only one ‘-‘ (like -g and -b). But, others have ‘–‘ (like –tensor, –FRT, –FRACT, –nii, –generate-stats)

Also, for –nii flag use the extension ‘file.nii.gz’. No need to unzip the files.

Please adapt these changes in your code and let us know.
All the best,
Clio Gonzalez

[Author]

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