[porats]

I loaded bss_data, bss_model, and save_bss_out for FA analyses as specified in the PowerPoints for BBSR. The log files show:

read atlas image C:\Program Files\BrainSuite19b\svreg\BrainSuiteAtlas1\mri.bfc.nii.gz
no statistics file specified — generating atlas-only images.
no stat volume!
making output image isotropic

What does this mean?

I also get an error with “rt” cannot open the connection
Error in file(file, “rt”) : cannot open the connection
8.
file(file, “rt”)
7.
read.table(cluster_filepath, header = F, sep = “\t”)
6.
private$render_html(outdir, voxelcoord, overlay_name = c(bs_stat_overlays$log_pvalues_adjusted, bs_stat_overlays$tvalues_adjusted, bs_stat_overlays$log_pvalues, bs_stat_overlays$tvalues, bs_stat_overlays$corr_values, bs_stat_overlays$corr_values_masked_adjusted))
5.
bssrmd_volout$save_out(bss_data, bss_model, voxelcoord = voxelcoord, outdir)
4.
.local(bss_out, bss_data, bss_model, overwrite, …)
3.
save_out(bss_out, bss_data, bss_model, overwrite = overwrite, nclusters = nclusters)
2.
save_out(bss_out, bss_data, bss_model, overwrite = overwrite, nclusters = nclusters)
1.
save_bss_out(bss_data, bss_model, outdir = “C:\\Users\\shai7\\OneDrive – University of Southern California\\NRSA\\Pilot\\Stats\\ANOVA”)

help appreciated

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