[Anand Joshi]

Hi Luca,
Were you able to open the MRI volume in the BrainSuite? What kind of data format are you using?
Also there is a test data available on the BrainSuite website. Can you try and see if you can open that data?
Here is a link to the test data.
http://brainsuite.org/WebTutorialData/BrainSuiteTutorialCSE_Feb15.zip

Anand

[LucaF]

Hi Anand,
unfortunatley I cannot open my MRI data (.nii) since my BS goes in stuck immediatley I press on “open volume”…
Do you think matlab 2015b and BS15c has problem compatibility?
Luca

[Anand Joshi]

I don’t think it is related to Matlab version as Matlab comes into play only later at the labeling step. Are you able to open the volume by opening brainsuite and then dragging and droppping nii volume into brainsuite interface?
Another alternative is to right click on the nii file in windows explorer, and then select open with-> BrainSuite15c.
Do any of these options work on your computer?

[christ21]

I have the same problem like Luca. As soon as I press on “open volume” or “save volume” BS does not work any more. It is only possible to open the file by using the Windows Explorer.
I also use NIFTI format and have tried several versions of BS.

[David Shattuck]

I haven’t seen this problem previously — can both of you let me know what operating system/version you are using?

thanks,
David

[LucaF]

Dear David,
I’m using win 7 pro 64bit.
Now, dragging and dropping file works, and all steps until split hemispheres works.
I’m trying also to use BDP correction gui, but that additional tool still does’n work.
Luca
With that version of win and with Matlab 2015b do I need to download MCR_R2012a and Microsoft Visual C++ 2010 Redistributable Package?

Luca

[Anand Joshi]

Hi Luca,
Yes, you need to install MCR for R2012a version of matlab. Higher or lower versions of MCR are not compatible. Once you install the correct MCR, and the VC++ 2010 redistributable, I think all the steps will work fine.
Anand

[LucaF]

I already install both, I will re-try unistalling it and install again both.
Luca

[LucaF]

{Error using rmdir
C:\Users\SENSOR~1\AppData\Local\Temp\tpaefd12d0_3889_4aab_b4e1_352aa42c1d5f
could not be removed.

Error in load_nii_BIG_Lab (line 49)

OK now somthing better…improve.
Anyway during SVreg after 33% of working I get the following error…

Error in load_nii_z (line 38)
Error in svreg_volreg (line 184)
}
MATLAB:RMDIR:SomeDirectoriesNotRemoved

[Anand Joshi]

Can you reproduce this error? Do you get the exact same error when you try again? Were there other programs running in the background as well? I recommend closing all programs and then running BrainSuite only to see how it works.

[Zeynep]

Hi,
I’m installing brainsuite 16a in a windows 64-bit PC with Matlab2015b.Installation run correctly and the progrom opens. The program works without errors. In the result files, the .txt file can not be obtained.
In the same way, when I install another computer, I can get the txt. file.
What could be the error in my computer?
Zeynep

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