[shjoshi]

Hi Alice,

If you installed bss using pip install bss, then I’m suspecting it must be installed in /usr/local/lib/python2.7/site-packages/bss or some such location.

Did you move the bss folder to /Applications by any chance?

I noticed you typed /Application/
In the command you actually ran, I’m assuming you typed /Applications/ since that’s the correct folder name on Mac.

Thanks,
Shantanu

PS: I should also let you know, that we are moving bss from python to R in the future. The release will happen before the end of this month. So if you were not in a rush to analyze the data, you could wait for the r package release. Just a thought.

[alicemartini]

Hi,

many thanks for your prompt reply. You are right, bss is installed in /usr/local/lib/python2.7/site-packages/bss. However, there is no “bin” folder in it (and therefore the bss_prepare_data_for_tbm.py file).
Unfortunately I need BSS soon to analyze my data.

Best wishes,

AM

[shjoshi]

If bss is installed in /usr/local/lib/python2.7, then bss_prepare_data_for_tbm.py should go in the bin directory where you are calling python from. For e.g.
/usr/local/bin, /usr/bin etc..

you can do
which pip
or
which python

bss_prepare_data_for_tbm.py should be in the bin directory where your pip or python is located.

S

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