[siddharthgpta]

Hi

While running the following command

bdp.sh file_prefix.bfc.nii.gz --nii file_prefix_dwi_eddy.nii.gz -g file_prefix_dwi_eddy.nii.gz.eddy_rotated_bvecs -b file_prefix_dwi.bvals --t1-mask file_prefix_mask.nii.gz --dwi-mask file_prefix_dwi_mask.nii.gz

The program crashes (I assume it crashes as I don’t get an error message) and this is the script output:
Non-rigid registration started...
1/3 iterations completed.
2/3 iterations completed.
<bdp_path>/bdp.sh: line 555: 1558 Killed ${exe_dir}/bdp $args

Any help would be appreciated. Thank you!

[divarada]

Since bdp was killed, it is not crashing internally.
One possible reason might be that the system has run out of memory.

[siddharthgpta]

Thank you divarada for the reply! While re-running the code the fourth time I finally got an error saying that the system was out of memory. So I guess it’s my system’s fault. Sorry for the incorrect title!

[Author]

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