Welcome to BrainSuite16a1 (build #2777, built with Qt 5.6.1, compiled with MSVC2013 on Sep 15 2016)
Copyright (C) 2016 The Regents of the University of California
This program is free software and is released under a GNU General Public License; Version 2. For more details, please see the enclosed license files.
BrainSuite uses the Qt GUI Toolkit. The Qt GUI Toolkit is Copyright (C) 2015 Digia Plc and/or its subsidiary(-ies) and is licensed under the LGPL v2.1.
BrainSuite install directory: C:\Program Files\BrainSuite16a1
Using SVReg installed in directory C:\Program Files\BrainSuite16a1\svreg
Autosave Prefix is C:\Users\tooba\Desktop\checking brain suit/ADNI_002_S_0295_MR_MPR__GradWarp__B1_Correction__N3__Scaled_Br_20070319113623975_S13408_I45108
saved C:\Users\tooba\Desktop\checking brain suit\ADNI_002_S_0295_MR_MPR__GradWarp__B1_Correction__N3__Scaled_Br_20070319113623975_S13408_I45108.mask.nii.gz
saved C:\Users\tooba\Desktop\checking brain suit\ADNI_002_S_0295_MR_MPR__GradWarp__B1_Correction__N3__Scaled_Br_20070319113623975_S13408_I45108.bse.nii.gz
Skull Stripping took 0:03.289
wrote C:\Users\tooba\Desktop\checking brain suit\ADNI_002_S_0295_MR_MPR__GradWarp__B1_Correction__N3__Scaled_Br_20070319113623975_S13408_I45108.skull.label.nii.gz
wrote C:\Users\tooba\Desktop\checking brain suit\ADNI_002_S_0295_MR_MPR__GradWarp__B1_Correction__N3__Scaled_Br_20070319113623975_S13408_I45108.brain.dfs
wrote C:\Users\tooba\Desktop\checking brain suit\ADNI_002_S_0295_MR_MPR__GradWarp__B1_Correction__N3__Scaled_Br_20070319113623975_S13408_I45108.inner_skull.dfs
wrote C:\Users\tooba\Desktop\checking brain suit\ADNI_002_S_0295_MR_MPR__GradWarp__B1_Correction__N3__Scaled_Br_20070319113623975_S13408_I45108.outer_skull.dfs
wrote C:\Users\tooba\Desktop\checking brain suit\ADNI_002_S_0295_MR_MPR__GradWarp__B1_Correction__N3__Scaled_Br_20070319113623975_S13408_I45108.scalp.dfs
Skull and Scalp Modeling took 0:04.592
wrote C:\Users\tooba\Desktop\checking brain suit\ADNI_002_S_0295_MR_MPR__GradWarp__B1_Correction__N3__Scaled_Br_20070319113623975_S13408_I45108.bfc.nii.gz
Nonuniformity Correction took 0:19.572
wrote C:\Users\tooba\Desktop\checking brain suit\ADNI_002_S_0295_MR_MPR__GradWarp__B1_Correction__N3__Scaled_Br_20070319113623975_S13408_I45108.pvc.label.nii.gz
wrote C:\Users\tooba\Desktop\checking brain suit\ADNI_002_S_0295_MR_MPR__GradWarp__B1_Correction__N3__Scaled_Br_20070319113623975_S13408_I45108.pvc.frac.nii.gz
Tissue Classification took 0:03.870
running align linear
..\libraries\AIR5.3.0\src\align.c: 518: WARNING: Registration terminated due to a Hessian matrix that was not positive definite
Inspection of results is advised
finished align linear 0:10
running align warp
Performing warp alignment (order=5) of atlas brain to subject brain
..\libraries\AIR5.3.0\src\alignwarp.c: 262: WARNING: Registration terminated due to a Hessian matrix that was not positive definite
Inspection of results is advised
finished align warp 0:05
wrote C:\Users\tooba\Desktop\checking brain suit\ADNI_002_S_0295_MR_MPR__GradWarp__B1_Correction__N3__Scaled_Br_20070319113623975_S13408_I45108.hemi.label.nii.gz
wrote C:\Users\tooba\Desktop\checking brain suit\ADNI_002_S_0295_MR_MPR__GradWarp__B1_Correction__N3__Scaled_Br_20070319113623975_S13408_I45108.cerebrum.mask.nii.gz
Cerebrum Labeling took 0:17.225
Inner Cortical Mask took 0:01.029
wrote C:\Users\tooba\Desktop\checking brain suit\ADNI_002_S_0295_MR_MPR__GradWarp__B1_Correction__N3__Scaled_Br_20070319113623975_S13408_I45108.cortex.scrubbed.mask.nii.gz
Scrub Mask took 0:00.783
wrote C:\Users\tooba\Desktop\checking brain suit\ADNI_002_S_0295_MR_MPR__GradWarp__B1_Correction__N3__Scaled_Br_20070319113623975_S13408_I45108.cortex.tca.mask.nii.gz
Topology Correction took 3:14.883
wrote C:\Users\tooba\Desktop\checking brain suit\ADNI_002_S_0295_MR_MPR__GradWarp__B1_Correction__N3__Scaled_Br_20070319113623975_S13408_I45108.cortex.dewisp.mask.nii.gz
Wisp Removal took 0:12.686
wrote C:\Users\tooba\Desktop\checking brain suit\ADNI_002_S_0295_MR_MPR__GradWarp__B1_Correction__N3__Scaled_Br_20070319113623975_S13408_I45108.inner.cortex.dfs
Inner Cortical Surface took 0:01.218
copied cerebrum mask to displayed mask
using cerebrum mask to constrain surface expansion.
Completed pial surface generation.
wrote C:\Users\tooba\Desktop\checking brain suit\ADNI_002_S_0295_MR_MPR__GradWarp__B1_Correction__N3__Scaled_Br_20070319113623975_S13408_I45108.pial.cortex.dfs
Pial Surface took 15:00.801
wrote C:\Users\tooba\Desktop\checking brain suit\ADNI_002_S_0295_MR_MPR__GradWarp__B1_Correction__N3__Scaled_Br_20070319113623975_S13408_I45108.right.inner.cortex.dfs
wrote C:\Users\tooba\Desktop\checking brain suit\ADNI_002_S_0295_MR_MPR__GradWarp__B1_Correction__N3__Scaled_Br_20070319113623975_S13408_I45108.left.inner.cortex.dfs
wrote C:\Users\tooba\Desktop\checking brain suit\ADNI_002_S_0295_MR_MPR__GradWarp__B1_Correction__N3__Scaled_Br_20070319113623975_S13408_I45108.right.pial.cortex.dfs
wrote C:\Users\tooba\Desktop\checking brain suit\ADNI_002_S_0295_MR_MPR__GradWarp__B1_Correction__N3__Scaled_Br_20070319113623975_S13408_I45108.left.pial.cortex.dfs
Split Hemispheres took 0:01.818
Using Autosave Prefix:C:\Users\tooba\Desktop\checking brain suit\ADNI_002_S_0295_MR_MPR__GradWarp__B1_Correction__N3__Scaled_Br_20070319113623975_S13408_I45108
Finished file preparation 0.003
Executing: C:\Program Files\BrainSuite16a1\svreg\bin\svreg_label_surf_hemi.exe C:\Users\tooba\Desktop\checking brain suit\ADNI_002_S_0295_MR_MPR__GradWarp__B1_Correction__N3__Scaled_Br_20070319113623975_S13408_I45108 C:\Program Files\BrainSuite16a1\svreg\BCI-DNI_brain_atlas\BCI-DNI_brain left -v1
Executing: C:\Program Files\BrainSuite16a1\svreg\bin\svreg_label_surf_hemi.exe C:\Users\tooba\Desktop\checking brain suit\ADNI_002_S_0295_MR_MPR__GradWarp__B1_Correction__N3__Scaled_Br_20070319113623975_S13408_I45108 C:\Program Files\BrainSuite16a1\svreg\BCI-DNI_brain_atlas\BCI-DNI_brain right -v1
Error running surface labeling. Processing halted.
left log:
—–
Labeling left hemisphere
Error using copyfile
The system cannot find the path specified.
Error in svreg_label_surf_hemi (line 93)
MATLAB:COPYFILE:OSError
right log:
—–
Labeling right hemisphere
Error using copyfile
The system cannot find the path specified.
Error in svreg_label_surf_hemi (line 93)
MATLAB:COPYFILE:OSError
Register and Label Brain took 8:19.431
sequence took 27:41.226
