Reply To: question for BDP installation and usage

#4784
David Shattuck
Keymaster

    I am not near a Windows machine at the moment, but I just tried this on Linux using the data from https://brainsuite.org/tutorials/dtiexercise/ and it started. I copied the arguments from your post.

    I will try it on Windows later today and get back to you.

    BrainSuiteTutorialDWI>/opt/BrainSuite21a/bdp/bdp.sh 2523412.bfc.nii.gz --tensor --nii 2523412.dwi.nii.gz -g 2523412.dwi.bvec -b 2523412.dwi.bval
    
    BDP Version: 21a (build #0081), released 2021-05-05
    
    ================================================================================
                             Setting up dataset and inputs
    ================================================================================
    Reading input flags...
    
    Checking input files...
    
    .mask.nii.gz file found: 2523412.mask.nii.gz
    BDP will use this file as brain mask. You can specify a custom brain mask by
    using flag --t1-mask . The custom mask must overlay correctly
    with input BFC image in BrainSuite.
    
    Processing data with fileprefix:
    	2523412
    
    ================================================================================
                       Co-registration and Distortion Correction
    ================================================================================
    Reading the input parameters for co-registration...
    Total memory (physical+swap) found: 126.53GB