Hello,
This is the correct installation behavior. BSS will not install in the BrainSuite program folder, but will be installed in the Scripts\ directory.
Now there is some issue in setting the PATH where you get the warning,
“WARNING: The data being saved is truncated to 1024 characters.”
Can you check if these paths are correctly set?
Can you also post the output of python bss_run.py -h
Thanks,
Shantanu