[Nuua]

Hi!

Is it possible to change tractography made with BrainSuite to e.g. NiFti? So the results could be imported to other programs like FSL? Complete tractography or to “burn” part of it to structural MRI..?

[David Shattuck]

Hi Nuua –

Just to clarify what you are trying to do : do you basically want to sample the BrainSuite generated tracks into an image volume? Are you looking for a simple binary mask or a tract density map?

We do have some code to do these things. The first is in Matlab, and you can download the source code here:

http://neuroimage.usc.edu/neuro/Resources/TractConnect

Will that provide what you need?

We also have some additional C++ command line tools for this that we haven’t released it publicly yet. I expect we will have those available in the next two weeks.

thanks,
David Shattuck

[Author]

Posts