steso

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  • in reply to: bdp problem with nii.gz on windows #108
    steso
    Participant

    Hi

    I started from scratch, regenerated the bfc file in BrainSuite and now it’s working! Probably, the file was still somehow corrupted even though I was able to open it in other tools.
    I’ll keep you posted if I run into other problems.
    Thanks again

    Best

    Stefan

    in reply to: bdp problem with nii.gz on windows #104
    steso
    Participant

    I can open the T1 in BrainSuite without any problems, also in mricron or unzip it with 7-zip, no problem. The error occurs when running the distortion correction in bdp:

    bdp.exe t1.bfc.nii.gz –nii dwi.nii –bmat table.mat –dwi-mask mask.nii

    Reading input flags…

    Checking input files…
    Error using gunzip>gunzipwrite (line 184)
    File “t1.bfc.nii.gz” is not in GZIP format.

    Error in gunzip>gunzipEntries (line 122)

    Error in gunzip (line 64)

    Error in load_untouch_nii_gz (line 53)

    Error in check_nifti_file (line 40)

    Error in bdp_setup (line 745)

    Error in BrainSuite_Diffusion_pipeline (line 14)

    MATLAB:gunzip:notGzipFormat

    Best

    Stefan

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