[cclan]

Hi professor Joshi

Would it be possible for you to kindly take a look at my thicknessPVC processed files, especially the out put of thicknessPVC, the atlas.pvc-thickness_0-6mm.right.mid.cortex.dfs and atlas.pvc-thickness_0-6mm.leftt.mid.cortex.dfs, etc. to see if they are processed correctly?

If it is OK, I will send a processed folder via dropbox link to your email, ajoshi@usc.edu ?

Thank you very much!

Best wishes,
Chen-Chia

[cclan]

Hi Professor Joshi

Is your email ajoshi@sipi.usc.edu?
Perhaps I could send you a dropbox link via email of one of the subject folder I processed on my college HPC with cortical_extraction.sh, svreg.sh, and thicknessPVC.sh?
The subjects’ folder all showed stagnation of the PCG function in thicknessPVC.sh.

Thank you very much!

Best regards,
Chen-Chia

[cclan]

Hi

The *left.inner.cortex.dfs and *right inner cortex.dfs were all grey and looks OK, the pial.cortex.dfs are mostly red wit blue patches over occipital pole, fusiform gyri and OFC and the contour looks fine.
However, the atlas.pvc-thickness_0-6mm.right.mid.cortex.dfs and atlas.pvc-thickness_0-6mm.leftt.mid.cortex.dfs were on the surface with contour similar to atlas.right.mid.cortex.jacobian.dfs and atlas.left.mid.cortex.jacobian.dfs unlike the ones in the ICBM tutorial output folders.

Thank you!

[cclan]

Hi

Which one of the output files would be best to look at?

Thank you very much!

[Author]

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