while running bss_run.py command it shows error

Forums Forums BrainSuite Statistics toolbox (BSS) while running bss_run.py command it shows error

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    • #1414
      yubraj
      Participant

      yubraj@Liverpool:~/Desktop/BRAIN_CSE$ /home/yubraj/anaconda3/bin/bss_prepare_data_for_tbm.py ~/Desktop/BRAIN_CSE OASIS_demographics.csv modelspec_skeleton_tbm.ini -sigma 2.5
      /home/yubraj/anaconda3/lib/python3.6/site-packages/h5py/__init__.py:36: FutureWarning: Conversion of the second argument of issubdtype from float to np.floating is deprecated. In future, it will be treated as np.float64 == np.dtype(float).type.
      from ._conv import register_converters as _register_converters
      One or more subjects may be missing jacobian determinants at the smoothing level 2.5 mm.
      Will recalculate jacobian determinants for all subjects.
      One or more subjects may be missing *.svreg.inv.map.nii.gz files. These are required for computing the jacobians.
      Please ensure that svreg was executed on the subjects and *.svreg.inv.map.nii.gz exists in each subject directory.
      Elapsed time 0.0041501522064208984 sec.
      yubraj@Liverpool:~/Desktop/BRAIN_CSE$ /home/yubraj/anaconda3/bin/bss_run.py modelspec_skeleton_tbm.ini ~/Desktop/tbm_out
      Traceback (most recent call last):
      File “/home/yubraj/anaconda3/bin/bss_run.py”, line 47, in <module>
      from bss.modelspec import ModelSpec
      File “/home/yubraj/anaconda3/lib/python3.6/site-packages/bss/modelspec.py”, line 30, in <module>
      import ConfigParser
      ModuleNotFoundError: No module named ‘ConfigParser’

      During handling of the above exception, another exception occurred:

      Traceback (most recent call last):
      File “/home/yubraj/anaconda3/bin/bss_run.py”, line 54, in <module>
      sys.stdout.write(‘\nError: ‘ + e.message + ‘\n’)
      AttributeError: ‘ModuleNotFoundError’ object has no attribute ‘message’

    • #2547
      Mobearing
      Participant

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