Tractography from cmd and results exportation

Forums Forums BrainSuite Diffusion Pipeline (BDP) Tractography from cmd and results exportation

  • This topic has 1 reply, 1 voice, and was last updated 6 months ago by Anonymous.
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    • #2224
      tmedani
      Participant

      Dear Brainsuite team,

      I’m using the Brainsuite with the command line to process DWI data and generate the tensors.

      I have a script and I’m wondering if it’s possible to call the Tracktography module from the command line?
      (from the *.eig files)

      Also, I would like to export the results as TRK files (http://trackvis.org/docs/?subsect=fileformat).

      Is there any command line to use for this purpose?

      Thank you in advance for your help.

      Best regards
      Takfarinas

    • #3499
      Anonymous
      Inactive

      Hi tmedani

      Did you get all the previous outputs by command line for Cortical Extraction and SVReg?

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