no statistics file specified

Forums Forums BrainSuite Statistics toolbox (BSS) no statistics file specified

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    • #2235
      porats
      Participant

      I loaded bss_data, bss_model, and save_bss_out for FA analyses as specified in the PowerPoints for BBSR. The log files show:

      read atlas image C:\Program Files\BrainSuite19b\svreg\BrainSuiteAtlas1\mri.bfc.nii.gz
      no statistics file specified — generating atlas-only images.
      no stat volume!
      making output image isotropic

      What does this mean?

      I also get an error with “rt” cannot open the connection
      Error in file(file, “rt”) : cannot open the connection
      8.
      file(file, “rt”)
      7.
      read.table(cluster_filepath, header = F, sep = “\t”)
      6.
      private$render_html(outdir, voxelcoord, overlay_name = c(bs_stat_overlays$log_pvalues_adjusted, bs_stat_overlays$tvalues_adjusted, bs_stat_overlays$log_pvalues, bs_stat_overlays$tvalues, bs_stat_overlays$corr_values, bs_stat_overlays$corr_values_masked_adjusted))
      5.
      bssrmd_volout$save_out(bss_data, bss_model, voxelcoord = voxelcoord, outdir)
      4.
      .local(bss_out, bss_data, bss_model, overwrite, …)
      3.
      save_out(bss_out, bss_data, bss_model, overwrite = overwrite, nclusters = nclusters)
      2.
      save_out(bss_out, bss_data, bss_model, overwrite = overwrite, nclusters = nclusters)
      1.
      save_bss_out(bss_data, bss_model, outdir = “C:\\Users\\shai7\\OneDrive – University of Southern California\\NRSA\\Pilot\\Stats\\ANOVA”)

      help appreciated

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