I’m interested in using two additional tools for diffusion processing:
joint_denoise and Tract connect. My question is: are they already implemented in the BDP diffusion Pipeline as a routine or I need to run them separetely from Matlab?
Thank you very much for your support
Order of usage : You should run the joint denoising prior to running BDP. Then run BDP and use BDP results to calculate tracts on BrainSuite. And finally use the Tract Connect software (that uses multiple BrainSuite outputs including tractography results) to analyze white matter.