Exporting the segmentation to MATLAB

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    • #705
      aliakbari
      Participant

      Hi Dear David,
      Am going to use Brainsuite segmentation in MATLAB, to do this i use load_nii to read the fileprefix.pvc.label.nii.gz and loading it in Variables but i can’t see the segmented variables( like GM,CSF and…).I just see hdr,filetype,fileprefix,machine,img and original.How can i see the variables independently?
      I’d appreciate your help on it.Looking forward to hearing from you.
      Sincerely

    • #720
      sychoi
      Participant

      you can find the ROI ID and descriptions in the an xml file called “brainsuite_labeldescription.xml” in your atlas folder. The atlas directory can be found in your brainsuite installation directory:
      Windows:
      C:\Program Files\BrainSuite16a1\svreg\BCI-DNI_brain_atlas\brainsuite_labeldescription.xml
      Mac:
      /Applications/BrainSuite16a1/svreg/BCI-DNI_brain_atlas/brainsuite_labeldescription.xml

    • #800
      aliakbari
      Participant

      Thank you.

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