Exporting the segmentation to MATLAB

Forums Forums General Questions Exporting the segmentation to MATLAB

This topic contains 2 replies, has 2 voices, and was last updated by  aliakbari 3 months ago.

  • Author
    Posts
  • #705

    aliakbari
    Participant

    Hi Dear David,
    Am going to use Brainsuite segmentation in MATLAB, to do this i use load_nii to read the fileprefix.pvc.label.nii.gz and loading it in Variables but i can’t see the segmented variables( like GM,CSF and…).I just see hdr,filetype,fileprefix,machine,img and original.How can i see the variables independently?
    I’d appreciate your help on it.Looking forward to hearing from you.
    Sincerely

  • #720

    sychoi
    Participant

    you can find the ROI ID and descriptions in the an xml file called “brainsuite_labeldescription.xml” in your atlas folder. The atlas directory can be found in your brainsuite installation directory:
    Windows:
    C:\Program Files\BrainSuite16a1\svreg\BCI-DNI_brain_atlas\brainsuite_labeldescription.xml
    Mac:
    /Applications/BrainSuite16a1/svreg/BCI-DNI_brain_atlas/brainsuite_labeldescription.xml

  • #800

    aliakbari
    Participant

    Thank you.

You must be logged in to reply to this topic.