November 22, 2017 at 4:20 am #960
A probably stupid question but although in the label description file are many ROIs mentioned, not all of them are included in my analysed patients.
Did I do something false or does it have to do with the (Brainsuite-)atlas that I used?
For example Corpus Callosum, transverse temporal gyrus and so on.
April 11, 2018 at 12:48 pm #1202
If the *.roiwise.stats.txt file reports the volumes of then ROIs then these ROIs should be generated by BrainSuite. If the ROI volumes are not reported in the .txt file, then it is likely that something in the cortical extraction or registration sequence has not worked well. Please check the outputs at each stage to figure out.
October 20, 2018 at 7:35 am #1526
I`m a little bit confused on how to use the generate_vol_param_stats_xls.sh command.
Where do I find the requested param_nii_file?
If I try this:
/opt/BrainSuite18a/svreg/bin/generate_vol_param_stats_xls.sh SUBJECT -v2
It says that the *.label.nii.gz file is missing. But its there!
I need Help!
root@voltool:/home/flo/DATA/Files/RAD-2010-261829# /opt/BrainSuite18a/svreg/bin/generate_vol_param_stats_xls.sh /home/flo/DATA/Files/RAD-2010-261829 -v2 Error using generate_vol_param_stats_xls (line 57) SVREG label file missing: SVREG volume labels file not found. Please check if <name>.svreg.corr.label.nii.gz or <name>.svreg.label.nii.gz or <name>.svreg.corr.manual.label.nii.gz exists. root@voltool:/home/flo/DATA/Files/RAD-2010-261829# ls -l | grep *.svreg.label* -rwxrwxrwx 1 root root 343194 Okt 20 15:23 RAD-2010-261829.svreg.label.nii.gz
October 20, 2018 at 9:18 am #1527
Can you please explain what you are trying to do? I want to have a better idea of what you are doing so that I have a better idea and suggest the correct command.
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