I am using BDP to process data acquired similar to HCP (AP-PA dwi data). Unfortunately the majority of this dwi data only has AP collected (multishell). I am only using those scans with –3dshore flag which requires –diffusion_time_ms. My questions are:
1. can I get some clarification on the input required for diffusion_time_ms. is this TR, acquisition time, TE?
2. documentation on when to use 3dshore vs GQI?
Thank you in advance for any help