BDP multi-shell processing 3Dshore

Forums Forums BrainSuite Diffusion Pipeline (BDP) BDP multi-shell processing 3Dshore

  • This topic is empty.
Viewing 0 reply threads
  • Author
    Posts
    • #2210
      jcontreras
      Participant

      I am using BDP to process data acquired similar to HCP (AP-PA dwi data). Unfortunately the majority of this dwi data only has AP collected (multishell). I am only using those scans with –3dshore flag which requires –diffusion_time_ms. My questions are:
      1. can I get some clarification on the input required for diffusion_time_ms. is this TR, acquisition time, TE?
      2. documentation on when to use 3dshore vs GQI?
      Thank you in advance for any help

Viewing 0 reply threads
  • You must be logged in to reply to this topic.