BDP error (badsubscript)

Forums Forums BrainSuite Diffusion Pipeline (BDP) BDP error (badsubscript)

Viewing 2 reply threads
  • Author
    Posts
    • #1583
      balukrishnan
      Participant

      Hi

      I am getting the following error when I run BDP on my data

      Transforming input file to diffusion coordinates: T1.niiSubscript indices must either be real positive integers or logicals.

      Error in check_nifti_file (line 34)

      Error in transfer_T1_to_diffusion (line 52)

      Error in coregister_diffusion_mprage_pipeline (line 333)

      Error in BrainSuite_Diffusion_pipeline (line 26)

      MATLAB:badsubscript

      Can anyone help me with debugging it?

      Balu

    • #3160
      Taylorariko
      Participant

      Hello,

      I am having a similar problem. Any help?

      >>/Applications/BrainSuite21a/bdp/bdp.sh T1.bfc.nii.gz –nii DW.nii –bval bval.bval –bvec bvec.bvec

      BDP Version: 21a (build #0081), released 2021-05-05

      ================================================================================
      Setting up dataset and inputs
      ================================================================================
      Reading input flags…
      Did not detect –FRT/–FRACT/–tensor/–3dshore/–gqi/–erfo. Using default
      setting of estimating tensors.

      Checking input files…
      Array indices must be positive integers or logical values.

      Error in check_nifti_file (line 34)

      Error in bdp_setup (line 894)

      Error in BrainSuite_Diffusion_pipeline (line 13)

      MATLAB:badsubscript

      >>

      Thanks!
      Taylor

    • #3528
      Whiiz
      Participant

      Hey,

      having a similar problem, any solutions yet?

      Error in find_bounding_box (line 16)

      Error in EPI_correct_files_registration_INVERSION>trim_msk_PED (line 513)

      Error in EPI_correct_files_registration_INVERSION (line 271)

      Error in coregister_diffusion_mprage_pipeline (line 219)

      Error in BrainSuite_Diffusion_pipeline (line 26)

      MATLAB:badsubscript

Viewing 2 reply threads
  • You must be logged in to reply to this topic.