BDP Crash

Viewing 2 reply threads
  • Author
    Posts
    • #1164
      siddharthgpta
      Participant

      Hi

      While running the following command

      bdp.sh file_prefix.bfc.nii.gz --nii file_prefix_dwi_eddy.nii.gz -g file_prefix_dwi_eddy.nii.gz.eddy_rotated_bvecs -b file_prefix_dwi.bvals --t1-mask file_prefix_mask.nii.gz --dwi-mask file_prefix_dwi_mask.nii.gz

      The program crashes (I assume it crashes as I don’t get an error message) and this is the script output:
      Non-rigid registration started...
      1/3 iterations completed.
      2/3 iterations completed.
      <bdp_path>/bdp.sh: line 555: 1558 Killed ${exe_dir}/bdp $args

      Any help would be appreciated. Thank you!

    • #1167
      divarada
      Participant

      Since bdp was killed, it is not crashing internally.
      One possible reason might be that the system has run out of memory.

    • #1171
      siddharthgpta
      Participant

      Thank you divarada for the reply! While re-running the code the fourth time I finally got an error saying that the system was out of memory. So I guess it’s my system’s fault. Sorry for the incorrect title!

Viewing 2 reply threads
  • You must be logged in to reply to this topic.