BDP Crash

This topic contains 2 replies, has 2 voices, and was last updated by  siddharthgpta 2 years ago.

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  • #1164

    siddharthgpta
    Participant

    Hi

    While running the following command

    bdp.sh file_prefix.bfc.nii.gz --nii file_prefix_dwi_eddy.nii.gz -g file_prefix_dwi_eddy.nii.gz.eddy_rotated_bvecs -b file_prefix_dwi.bvals --t1-mask file_prefix_mask.nii.gz --dwi-mask file_prefix_dwi_mask.nii.gz

    The program crashes (I assume it crashes as I don’t get an error message) and this is the script output:
    Non-rigid registration started...
    1/3 iterations completed.
    2/3 iterations completed.
    <bdp_path>/bdp.sh: line 555: 1558 Killed ${exe_dir}/bdp $args

    Any help would be appreciated. Thank you!

  • #1167

    divarada
    Participant

    Since bdp was killed, it is not crashing internally.
    One possible reason might be that the system has run out of memory.

  • #1171

    siddharthgpta
    Participant

    Thank you divarada for the reply! While re-running the code the fourth time I finally got an error saying that the system was out of memory. So I guess it’s my system’s fault. Sorry for the incorrect title!

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