Automatic Processing Using Command-Line / missing \bin\bse.exe

Forums Forums Cortical Surface Extraction Automatic Processing Using Command-Line / missing \bin\bse.exe

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    • #1102
      NaglisR
      Participant

      Hi everyone,

      I am trying to perform cortical surface extraction using the command line as is described in here (http://brainsuite.org/processing/surfaceextraction/cse-command-line/) using Windows. I am able to find a file cortical_extraction.cmd which contains a line:
      if not exist “%BrainSuitePath%\bin\bse.exe” (
      echo Could not find BrainSuite binaries. Quitting…
      However, in my installation folder which is C:\Program Files\BrainSuite17a, the bin folder doesn’t contain a bse.exe file.
      Is this a bug? How can I use the cortical surface extraction using cmd in Windows?

      Thanks in advance!

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