I am trying to perform cortical surface extraction using the command line as is described in here (http://brainsuite.org/processing/surfaceextraction/cse-command-line/) using Windows. I am able to find a file cortical_extraction.cmd which contains a line:
if not exist “%BrainSuitePath%\bin\bse.exe” (
echo Could not find BrainSuite binaries. Quitting…
However, in my installation folder which is C:\Program Files\BrainSuite17a, the bin folder doesn’t contain a bse.exe file.
Is this a bug? How can I use the cortical surface extraction using cmd in Windows?