Reply To: BDP error

Forums Forums BrainSuite Diffusion Pipeline (BDP) BDP error Reply To: BDP error

#683
carnico
Participant

Hi to all,

I think I’ve the same problem.

The <fileprefix>.dwi.RSA.nii.gz to me looks reasonable. (https://www.dropbox.com/s/fdhhn9l1futgst9/Screen%20Shot%202017-04-08%20at%2010.22.02.png?dl=0)mask

I try to run the command line with a mask defined by me:

/Applications/BrainSuite16a1/bdp/bdp.sh t1.bfc.nii.gz –dwi-mask dti_brain_mask.nii.gz –tensor –FRT –FRACT –nii dti.nii -g dti.bvec -b dti.bval

and changing the dwi masking method:

/Applications/BrainSuite16a1/bdp/bdp.sh t1.bfc.nii.gz –dwi-masking-method intensity –tensor –FRT –FRACT –nii dti.nii -g dti.bvec -b dti.bval

but same error appear.

This is the outputlog link:

log

Do you have any suggestion?

Best Regards

Nicolò