Reply To: average cortical thickness of ROI

Forums Forums Surface and Volume Registration (SVReg) average cortical thickness of ROI Reply To: average cortical thickness of ROI

#169
christ21
Participant

Dear Anand,
thank you very much for your quick answer!
I am checking the folder to which I saved the files created by Cortical Surface Extraction and SVReg using the GUI. The folder therefore contains the following files:
the nii-file
fileprefix.bse.nii
“.mask.nii
“.bfc.nii
“.brain
“.cerbrum.mask.nii
“.cortex.dewisp.mask.nii
“.cortex.scrubbed.mask.nii
“.cortex.tca.mask.nii
“.hemi.label.nii
“.init.cortex.mask.nii
“.inner.cortex
“.inner_skull
“.left.inner.cortex
“.left.mapped.dfc
“.left.mid.cortex.svreg.init
“.left.pial.cortex
“.mask.nii
“.outer_skull
“.pial.cortex
“.pvc.frac.nii
“.pvc.label.nii
“.right.inner.cortex
“.right.mapped.dfc
“.right.mid.cortex.svreg.init
“.right.pial.cortex
“.scalp
“.skull.label.nii
brainsuite_labeldescription

Furthermore, the folder contains the folder fileprefix.svreg.tmp. In this folder I also could not find the file ‘fileprefix.roiwise.stats.txt’
I use Brain Suite 15b and installed Matlab Runtime R2012a. My PC runs Windows 7.
I didn’t notice any error. I also tried it several times on another Windows PC with different nii-files. Again, I could not find the file.
Is this file created automatically by SVReg using the GUI or do I have to do anything special to have it created?
Thank you very much for your help!
Kind regards,
Christian