Oh ok, I had not noticed that flag, thank you.
Is it possible to create a connectivity graph using diffusion images? It seems that to run SVreg, which seems to be required for the connectivity graph because the program needs the SVreg ROI label, you must first run the cortical extraction sequence. Is there a way to run SVreg without first running CSE? Or alternatively is there a way to create the connectivity graph without running SVreg?
What would the order of steps I would take to do so if either of the above are possible?
Many thanks, sorry for all the questions.