Reply To: Process Diffusion Data with BDP

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#1397
divarada
Participant

Can you try adding masks for structural and diffusion data and try running the BDP command.

There are two flags I want you to add and let me know if the error still persists:
1. –dwi-mask <filename.nii.gz> : Specifies the filename of the brain-mask file for diffusion data.
2. –t1-mask <filename.nii.gz> : Specifies the filename of the brain-mask file for input T1-weighted image.This mask can be same as the brain mask generated during BrainSuite extraction sequence.

More details of flags can be found at http://brainsuite.org/processing/diffusion/flags/